Quick Start
Project Statistics
Once finished with any step or at the beginning, we can obtain a general chart that shows the state of the analysis of the entire data.
We will be able to know the number of sequences that belong to a concrete state (Tools > General Charts).
The data distribution can be visualized in two different charts, one as a bar chart and the other as a pie chart (Figures 1 and 2).
These are the different states we are going to find in the charts:
Total: The total amount of sequences in the project (only in the bar chart).
Without Analysis: Sequences without processing or have been reset in the BLAST menu (functional analysis > Blast > Remove Blast Results).
With Only InterProScan: Sequences that only have InterProScan and nothing else.
Without Blast Hits: Sequences that have been sent to BLAST but no hits have been found.
With Blast: Successful sequences after BLAST step or have been reset in the Mapping menu (functional analysis > Blast2GO Mapping > Remove Mapping).
With Mapping: Successful sequences after Mapping step or they have been reset in the Annotation menu (functional analysis > Blast2GO Annotation > Remove Annotation).
With GO Annotation: Successful sequences after Annotation step.
With Manual Annotation: Manually annotated sequences before or after executing the annotation step.
With GO-Slim Annotation: Sequences with GO-Slim Annotation.
Each state will have assigned a specific colour.
It is also possible to see the progress of the analysis (Figure 3).
From the 1000 sequences, 700 have blast results.
From the chart, it could suggest there are still some analyses to be completed, such as mapping, annotation and specially InterProScan.
Once all the analysis steps have been executed the Analysis Progress chart should be similar to the one in Figure 4.
Figure 1: Data Distribution Bar chart
Figure 2: Data Distribution Pie chart
Figure 3: Analysis Progress Chart
Figure 4: Analysis Progress Chart after running all analysis