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Example Datasets
Transcriptomics
Gene-Level Analysis
Transcript-Level Analysis
De Novo Transcriptome Characterization
RNA-Seq BAM File Quality Control
RNA-Seq BAM File Quality Control with RSeQC (Gallus gallus)
RNA-Seq BAM File Quality Control with RSeQC (Drosophila melanogaster)
Genome Analysis
Long Read Prokaryotic Analysis
Short Read Eukaryotic Analysis
Genome Assembly Comparison with QUAST
Genetic Variation
Genetic Variation Annotation Pipeline
GWAS and Gene Set Analysis in OmicsBox
Functional Analysis
Functional Annotation
Pathway Analysis
Metagenomics
Taxonomic Classification with Kraken 2
Functional Characterization
Single Cell Data Analysis
Single-Cell Clustering
scRNA-seq Differential Expression
scRNA-seq Trajectory Inference
Long Read Data Analysis
Long Reads Quality Assessment
Long reads analysis - IsoSeq
Long-Read Isoform Identification with FLAIR
Long Reads Transcriptome Analysis with SQANTI3
Blog / Videos / Tips and Tricks
Reads Demultiplexing with Cutadapt
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Metagenomics
Functional Characterization
Taxonomic Classification with Kraken 2
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